HL_9Q1Q_048

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

9Q1Q|1|5|C|2739, 9Q1Q|1|5|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_048 not in the Motif Atlas

Homologous match to HL_9PN5_039

Geometric discrepancy: 0.2451

The information below is about HL_9PN5_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

9Q1Q|1|5|C|2738
9Q1Q|1|5|C|2739
9Q1Q|1|5|U|2740
9Q1Q|1|5|U|2741
9Q1Q|1|5|G|2742

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain p

60S ribosomal protein L37a