HL_9Q1Q_050

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9Q1Q|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_050 not in the Motif Atlas

Homologous match to HL_8GLP_046

Geometric discrepancy: 0.2987

The information below is about HL_8GLP_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Q1Q|1|5|U|2810
9Q1Q|1|5|G|2811
9Q1Q|1|5|A|2812
9Q1Q|1|5|A|2813
9Q1Q|1|5|C|2814
9Q1Q|1|5|A|2815
9Q1Q|1|5|G|2816

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19