HL_9Q1Q_057
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1Q_057 not in the Motif Atlas
- Homologous match to HL_9H3G_052
- Geometric discrepancy: 0.1617
- The information below is about HL_9H3G_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.4
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|5|G|3757
9Q1Q|1|5|U|3758
9Q1Q|1|5|A|3759
9Q1Q|1|5|A|3760
9Q1Q|1|5|C|3761
9Q1Q|1|5|U|3762
9Q1Q|1|5|A|3763
9Q1Q|1|5|U|3764
9Q1Q|1|5|G|3765
9Q1Q|1|5|A|3766
9Q1Q|1|5|C|3767
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: