HL_9Q1Q_060

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9Q1Q|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_060 not in the Motif Atlas

Homologous match to HL_9AXU_050

Geometric discrepancy: 0.123

The information below is about HL_9AXU_050

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9Q1Q|1|5|C|4193
9Q1Q|1|5|U|4194
9Q1Q|1|5|G|4195
9Q1Q|1|5|G|4196
9Q1Q|1|5|G|4197
9Q1Q|1|5|G|4198
9Q1Q|1|5|C|4199
9Q1Q|1|5|G|4200
9Q1Q|1|5|G|4201

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain b

eL29