HL_9Q1Q_066
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 9Q1Q|1|5|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1Q_066 not in the Motif Atlas
- Homologous match to HL_8GLP_065
- Geometric discrepancy: 0.3723
- The information below is about HL_8GLP_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14856.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9Q1Q|1|5|U|4352
9Q1Q|1|5|U|4353
9Q1Q|1|5|U|4354
9Q1Q|1|5|G|4355
9Q1Q|1|5|G|4356
9Q1Q|1|5|G|4357
9Q1Q|1|5|U|4358
9Q1Q|1|5|U|4359
9Q1Q|1|5|U|4360
9Q1Q|1|5|U|4361
9Q1Q|1|5|A|4362
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain a
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36
- Chain o
- eL42
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