HL_9Q1Q_067
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1Q_067 not in the Motif Atlas
- Homologous match to HL_9PN5_059
- Geometric discrepancy: 0.1818
- The information below is about HL_9PN5_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.4
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9Q1Q|1|5|C|4417
9Q1Q|1|5|G|4418
9Q1Q|1|5|U|4419
9Q1Q|1|5|U|4420
9Q1Q|1|5|C|4421
9Q1Q|1|5|A|4422
9Q1Q|1|5|U|4423
9Q1Q|1|5|A|4424
9Q1Q|1|5|G|4425
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- Ribosomal protein L10
- Chain m
- Large ribosomal subunit protein eL40
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