HL_9Q1Q_092
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9Q1Q|1|9|C|450, 9Q1Q|1|9|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1Q_092 not in the Motif Atlas
- Homologous match to HL_9PN5_086
- Geometric discrepancy: 0.157
- The information below is about HL_9PN5_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.4
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|9|C|441
9Q1Q|1|9|C|442
9Q1Q|1|9|U|443
9Q1Q|1|9|G|444
9Q1Q|1|9|A|445
9Q1Q|1|9|G|446
9Q1Q|1|9|A|447
9Q1Q|1|9|A|448
9Q1Q|1|9|A|449
9Q1Q|1|9|C|450
9Q1Q|1|9|G|451
9Q1Q|1|9|G|452
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain GG
- 40S ribosomal protein S6
- Chain II
- 40S ribosomal protein S8
- Chain YY
- 40S ribosomal protein S24
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