HL_9Q1Q_092

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9Q1Q|1|9|C|450, 9Q1Q|1|9|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|C|441
9Q1Q|1|9|C|442
9Q1Q|1|9|U|443
9Q1Q|1|9|G|444
9Q1Q|1|9|A|445
9Q1Q|1|9|G|446
9Q1Q|1|9|A|447
9Q1Q|1|9|A|448
9Q1Q|1|9|A|449
9Q1Q|1|9|C|450
9Q1Q|1|9|G|451
9Q1Q|1|9|G|452

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain YY

40S ribosomal protein S24