HL_9Q1Q_094

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9Q1Q|1|9|A|500, 9Q1Q|1|9|C|502, 9Q1Q|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_094 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1817

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q1Q|1|9|C|498
9Q1Q|1|9|G|499
9Q1Q|1|9|A|500
9Q1Q|1|9|C|501
9Q1Q|1|9|C|502
9Q1Q|1|9|C|503
9Q1Q|1|9|G|504

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain EE

40S ribosomal protein S4

Chain YY

40S ribosomal protein S24