HL_9Q1Q_101

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_101 not in the Motif Atlas

Homologous match to HL_9PN5_095

Geometric discrepancy: 0.2251

The information below is about HL_9PN5_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9Q1Q|1|9|A|957
9Q1Q|1|9|G|958
9Q1Q|1|9|G|959
9Q1Q|1|9|U|960
9Q1Q|1|9|G|961
9Q1Q|1|9|A|962
9Q1Q|1|9|A|963
9Q1Q|1|9|A|964
9Q1Q|1|9|U|965
9Q1Q|1|9|U|966

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain OO

Small ribosomal subunit protein uS11

Chain aa

eS26