HL_9Q1S_047

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9Q1S|1|5|C|2794, 9Q1S|1|5|G|2796, 9Q1S|1|5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|C|2792
9Q1S|1|5|G|2793
9Q1S|1|5|C|2794
9Q1S|1|5|A|2795
9Q1S|1|5|G|2796
9Q1S|1|5|C|2797
9Q1S|1|5|A|2798
9Q1S|1|5|G|2799

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain P

60S ribosomal protein L17

Chain j

60S ribosomal protein L37

Chain l

60S ribosomal protein L39