HL_9Q1S_097

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9Q1S|1|9|G|821, 9Q1S|1|9|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1S_097 not in the Motif Atlas

Homologous match to HL_9PN5_092

Geometric discrepancy: 0.2305

The information below is about HL_9PN5_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9Q1S|1|9|U|820
9Q1S|1|9|G|821
9Q1S|1|9|U|822
9Q1S|1|9|U|823
9Q1S|1|9|C|824
9Q1S|1|9|A|825
9Q1S|1|9|A|826
9Q1S|1|9|A|827
9Q1S|1|9|G|828

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

Small ribosomal subunit protein uS4

Chain YY

40S ribosomal protein S24