HL_9Q1S_100
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1S_100 not in the Motif Atlas
- Homologous match to HL_9PN5_095
- Geometric discrepancy: 0.2209
- The information below is about HL_9PN5_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9Q1S|1|9|A|957
9Q1S|1|9|G|958
9Q1S|1|9|G|959
9Q1S|1|9|U|960
9Q1S|1|9|G|961
9Q1S|1|9|A|962
9Q1S|1|9|A|963
9Q1S|1|9|A|964
9Q1S|1|9|U|965
9Q1S|1|9|U|966
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain FF
- Small ribosomal subunit protein uS7
- Chain OO
- Small ribosomal subunit protein uS11
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