HL_9Q1S_100

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|A|957
9Q1S|1|9|G|958
9Q1S|1|9|G|959
9Q1S|1|9|U|960
9Q1S|1|9|G|961
9Q1S|1|9|A|962
9Q1S|1|9|A|963
9Q1S|1|9|A|964
9Q1S|1|9|U|965
9Q1S|1|9|U|966

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 1

NediV IRES

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain FF

Small ribosomal subunit protein uS7

Chain OO

Small ribosomal subunit protein uS11