HL_9Q1S_113

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9Q1S|1|9|U|1621, 9Q1S|1|9|U|1622, 9Q1S|1|9|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|A|1614
9Q1S|1|9|U|1615
9Q1S|1|9|U|1616
9Q1S|1|9|G|1617
9Q1S|1|9|C|1618
9Q1S|1|9|A|1619
9Q1S|1|9|A|1620
9Q1S|1|9|U|1621
9Q1S|1|9|U|1622
9Q1S|1|9|A|1623
9Q1S|1|9|U|1624
9Q1S|1|9|U|1625

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18

Chain dd

40S ribosomal protein S29