HL_9Q2O_023

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

9Q2O|1|5|C|1481, 9Q2O|1|5|G|1482, 9Q2O|1|5|C|1483, 9Q2O|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_023 not in the Motif Atlas

Homologous match to HL_9PN5_018

Geometric discrepancy: 0.5898

The information below is about HL_9PN5_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.5

Basepair signature

cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

9Q2O|1|5|G|1479
9Q2O|1|5|C|1480
9Q2O|1|5|C|1481
9Q2O|1|5|G|1482
9Q2O|1|5|C|1483
9Q2O|1|5|G|1484
9Q2O|1|5|C|1485
9Q2O|1|5|C|1486

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13

Chain i

60S ribosomal protein L36