HL_9Q2O_059

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9Q2O|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_059 not in the Motif Atlas

Homologous match to HL_9AXU_050

Geometric discrepancy: 0.331

The information below is about HL_9AXU_050

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9Q2O|1|5|C|4193
9Q2O|1|5|U|4194
9Q2O|1|5|G|4195
9Q2O|1|5|G|4196
9Q2O|1|5|G|4197
9Q2O|1|5|G|4198
9Q2O|1|5|C|4199
9Q2O|1|5|G|4200
9Q2O|1|5|G|4201

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain b

eL29