HL_9Q2O_117
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUUAGCAUG
- Length
- 9 nucleotides
- Bulged bases
- 9Q2O|1|AT|A|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q2O_117 not in the Motif Atlas
- Homologous match to HL_7E8O_002
- Geometric discrepancy: 0.4224
- The information below is about HL_7E8O_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90229.1
- Basepair signature
- cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9Q2O|1|AT|C|31
9Q2O|1|AT|U|32
9Q2O|1|AT|U|33
9Q2O|1|AT|A|34
9Q2O|1|AT|G|35
9Q2O|1|AT|C|36
9Q2O|1|AT|A|37
9Q2O|1|AT|U|38
9Q2O|1|AT|G|39
Current chains
- Chain AT
- Ala-tRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain PP
- Small ribosomal subunit protein uS19
- Chain XX
- 40S ribosomal protein S23
- Chain ee
- Small ribosomal subunit protein eS30
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