HL_9Q2P_002

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAGCAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_002 not in the Motif Atlas

Homologous match to HL_5J8B_109

Geometric discrepancy: 0.1519

The information below is about HL_5J8B_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81376.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

44

Unit IDs

9Q2P|1|2|C|31
9Q2P|1|2|U|32
9Q2P|1|2|U|33
9Q2P|1|2|A|34
9Q2P|1|2|G|35
9Q2P|1|2|C|36
9Q2P|1|2|A|37
9Q2P|1|2|U|38
9Q2P|1|2|G|39

Current chains

Chain 2

tRNA

Nearby chains

Chain 1

NediV ORF

Chain 3

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain PP

Small ribosomal subunit protein uS19

Chain QQ

Small ribosomal subunit protein uS9