HL_9Q2P_027

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9Q2P|1|5|U|1596, 9Q2P|1|5|A|1600, 9Q2P|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_027 not in the Motif Atlas

Homologous match to HL_9AXU_018

Geometric discrepancy: 0.1153

The information below is about HL_9AXU_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9Q2P|1|5|A|1593
9Q2P|1|5|C|1594
9Q2P|1|5|G|1595
9Q2P|1|5|U|1596
9Q2P|1|5|G|1597
9Q2P|1|5|C|1598
9Q2P|1|5|A|1599
9Q2P|1|5|A|1600
9Q2P|1|5|A|1601
9Q2P|1|5|U|1602

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain j

60S ribosomal protein L37