3D structure

PDB id
9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
9Q2P|1|5|G|4694, 9Q2P|1|5|C|4698
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9Q2P|1|5|C|4688
9Q2P|1|5|U|4689
9Q2P|1|5|G|4690
9Q2P|1|5|A|4691
9Q2P|1|5|A|4692
9Q2P|1|5|C|4693
9Q2P|1|5|G|4694
9Q2P|1|5|C|4695
9Q2P|1|5|C|4696
9Q2P|1|5|U|4697
9Q2P|1|5|C|4698
9Q2P|1|5|U|4699
9Q2P|1|5|A|4700
9Q2P|1|5|A|4701
9Q2P|1|5|G|4702

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
60S ribosomal protein L9
Chain O
Large ribosomal subunit protein uL13
Chain m
Large ribosomal subunit protein eL40

Coloring options:

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