HL_9Q2T_025
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9Q2T|1|5|U|1596, 9Q2T|1|5|A|1600, 9Q2T|1|5|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q2T_025 not in the Motif Atlas
- Homologous match to HL_9AXU_018
- Geometric discrepancy: 0.1245
- The information below is about HL_9AXU_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.4
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 13
Unit IDs
9Q2T|1|5|A|1593
9Q2T|1|5|C|1594
9Q2T|1|5|G|1595
9Q2T|1|5|U|1596
9Q2T|1|5|G|1597
9Q2T|1|5|C|1598
9Q2T|1|5|A|1599
9Q2T|1|5|A|1600
9Q2T|1|5|A|1601
9Q2T|1|5|U|1602
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17
- Chain j
- 60S ribosomal protein L37
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