HL_9Q2T_113

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9Q2T|1|9|U|1621, 9Q2T|1|9|U|1622, 9Q2T|1|9|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|A|1614
9Q2T|1|9|U|1615
9Q2T|1|9|U|1616
9Q2T|1|9|G|1617
9Q2T|1|9|C|1618
9Q2T|1|9|A|1619
9Q2T|1|9|A|1620
9Q2T|1|9|U|1621
9Q2T|1|9|U|1622
9Q2T|1|9|A|1623
9Q2T|1|9|U|1624
9Q2T|1|9|U|1625

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18

Chain TT

Small ribosomal subunit protein eS19

Chain dd

40S ribosomal protein S29