HL_9Q2T_119

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUCAAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2T_119 not in the Motif Atlas

Homologous match to HL_4V9Q_215

Geometric discrepancy: 0.1741

The information below is about HL_4V9Q_215

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9Q2T|1|PT|G|53
9Q2T|1|PT|U|54
9Q2T|1|PT|U|55
9Q2T|1|PT|C|56
9Q2T|1|PT|A|57
9Q2T|1|PT|A|58
9Q2T|1|PT|U|59
9Q2T|1|PT|C|60
9Q2T|1|PT|C|61

Current chains

Chain PT

ala-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

60S ribosomal protein L11

Chain o

eL42