HL_9Q3Q_003

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9Q3Q|1|A|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3Q_003 not in the Motif Atlas

Homologous match to HL_8B0X_035

Geometric discrepancy: 0.0529

The information below is about HL_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9Q3Q|1|A|G|123
9Q3Q|1|A|G|124
9Q3Q|1|A|A|125
9Q3Q|1|A|A|126
9Q3Q|1|A|A|127
9Q3Q|1|A|C|128

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain V

50S ribosomal protein L23