HL_9Q3Q_047
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 9Q3Q|1|A|A|1913
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q3Q_047 not in the Motif Atlas
- Homologous match to HL_8B0X_076
- Geometric discrepancy: 0.5185
- The information below is about HL_8B0X_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.3
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9Q3Q|1|A|G|1910
9Q3Q|1|A|PSU|1911
9Q3Q|1|A|A|1912
9Q3Q|1|A|A|1913
9Q3Q|1|A|C|1914
9Q3Q|1|A|3TD|1915
9Q3Q|1|A|A|1916
9Q3Q|1|A|PSU|1917
9Q3Q|1|A|A|1918
9Q3Q|1|A|A|1919
9Q3Q|1|A|C|1920
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- dapG mRNA
- Chain w
- Transfer RNA; tRNA
- Chain x
- Transfer RNA; tRNA
Coloring options: