HL_9Q3Q_091
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 9Q3Q|1|a|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q3Q_091 not in the Motif Atlas
- Homologous match to HL_8B0X_019
- Geometric discrepancy: 0.0493
- The information below is about HL_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9Q3Q|1|a|G|963
9Q3Q|1|a|A|964
9Q3Q|1|a|U|965
9Q3Q|1|a|2MG|966
9Q3Q|1|a|5MC|967
9Q3Q|1|a|A|968
9Q3Q|1|a|A|969
9Q3Q|1|a|C|970
9Q3Q|1|a|G|971
9Q3Q|1|a|C|972
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain w
- Transfer RNA; tRNA
- Chain x
- Transfer RNA; tRNA
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