HL_9Q3R_011

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9Q3R|1|A|G|329, 9Q3R|1|A|A|330, 9Q3R|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3R_011 not in the Motif Atlas

Homologous match to HL_8B0X_043

Geometric discrepancy: 0.0354

The information below is about HL_8B0X_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9Q3R|1|A|G|327
9Q3R|1|A|U|328
9Q3R|1|A|G|329
9Q3R|1|A|A|330
9Q3R|1|A|C|331
9Q3R|1|A|A|332
9Q3R|1|A|G|333
9Q3R|1|A|C|334
9Q3R|1|A|C|335

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

50S ribosomal protein L24