9Q3R Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9Q3R_001 | 1/A/59:68 | No text annotation | homologous HL_8B0X_033 HL_35677.5 | |
| HL_9Q3R_002 | 1/A/87:95 | No text annotation | homologous HL_8B0X_034 HL_65821.1 | |
| HL_9Q3R_003 | 1/A/123:128 | No text annotation | homologous HL_8B0X_035 HL_82710.4 | |
| HL_9Q3R_004 | 1/A/137:142 | No text annotation | homologous HL_8B0X_036 HL_61337.6 | |
| HL_9Q3R_005 | 1/A/158:168 | No text annotation | homologous HL_8B0X_037 NA | |
| HL_9Q3R_006 | 1/A/194:201 | No text annotation | homologous HL_8B0X_038 HL_02262.1 | |
| HL_9Q3R_007 | 1/A/225:230 | No text annotation | homologous HL_8B0X_039 HL_63151.1 | |
| HL_9Q3R_008 | 1/A/246:252 | No text annotation | homologous HL_8B0X_040 HL_76371.4 | |
| HL_9Q3R_009 | 1/A/305:312 | No text annotation | homologous HL_8B0X_041 HL_13999.5 | |
| HL_9Q3R_010 | 1/A/319:323 | No text annotation | geometric HL_9AXU_006 HL_75660.10 | |
| HL_9Q3R_011 | 1/A/327:335 | No text annotation | homologous HL_8B0X_043 HL_27670.6 | |
| HL_9Q3R_012 | 1/A/382:392 | No text annotation | homologous HL_8B0X_044 HL_91503.8 | |
| HL_9Q3R_013 | 1/A/410:417 | No text annotation | homologous HL_8B0X_045 HL_30680.5 | |
| HL_9Q3R_014 | 1/A/462:467 | No text annotation | homologous HL_8B0X_046 HL_34789.6 | |
| HL_9Q3R_015 | 1/A/487:493 | No text annotation | homologous HL_8B0X_047 HL_34789.6 | |
| HL_9Q3R_016 | 1/A/544:549 | No text annotation | ||
| HL_9Q3R_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_8B0X_048 HL_33597.7 | |
| HL_9Q3R_018 | 1/A/611:617 | No text annotation | homologous HL_8B0X_049 HL_34789.6 | |
| HL_9Q3R_019 | 1/A/629:634 | No text annotation | homologous HL_8B0X_050 HL_34789.6 | |
| HL_9Q3R_020 | 1/A/641:647 | No text annotation | homologous HL_8B0X_051 HL_07380.1 | |
| HL_9Q3R_021 | 1/A/712:719 | No text annotation | homologous HL_8B0X_052 HL_98423.5 | |
| HL_9Q3R_022 | 1/A/744:753 | No text annotation | homologous HL_7A0S_022 HL_50204.3 | |
| HL_9Q3R_023 | 1/A/779:785 | No text annotation | homologous HL_8B0X_054 HL_79773.1 | |
| HL_9Q3R_024 | 1/A/826:831 | No text annotation | homologous HL_8B0X_055 HL_27530.3 | |
| HL_9Q3R_025 | 1/A/885:891 | No text annotation | homologous HL_8B0X_056 HL_67772.3 | |
| HL_9Q3R_026 | 1/A/955:962 | GNRA | homologous HL_7A0S_026 HL_34789.6 | |
| HL_9Q3R_027 | 1/A/978:985 | No text annotation | homologous HL_8B0X_058 HL_47171.3 | |
| HL_9Q3R_028 | 1/A/1065:1074 | No text annotation | ||
| HL_9Q3R_029 | 1/A/1092:1099 | No text annotation | homologous HL_1MMS_004 HL_98423.5 | |
| HL_9Q3R_030 | 1/A/1222:1227 | No text annotation | homologous HL_8B0X_059 HL_34789.6 | |
| HL_9Q3R_031 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_8B0X_060 HL_33597.7 | |
| HL_9Q3R_032 | 1/A/1324:1330 | No text annotation | homologous HL_8B0X_061 HL_49081.2 | |
| HL_9Q3R_033 | 1/A/1363:1368 | No text annotation | homologous HL_8B0X_062 HL_34789.6 | |
| HL_9Q3R_034 | 1/A/1389:1398 | No text annotation | homologous HL_8B0X_063 HL_77449.3 | |
| HL_9Q3R_035 | 1/A/1451:1459 | No text annotation | homologous HL_8B0X_064 HL_00557.1 | |
| HL_9Q3R_036 | 1/A/1492:1498 | No text annotation | homologous HL_8B0X_065 HL_49081.2 | |
| HL_9Q3R_037 | 1/A/1533:1538 | No text annotation | homologous HL_8B0X_066 HL_61337.6 | |
| HL_9Q3R_038 | 1/A/1565:1568 | No text annotation | homologous HL_8B0X_067 HL_90436.5 | |
| HL_9Q3R_039 | 1/A/1612:1619 | No text annotation | homologous HL_8B0X_068 HL_28592.4 | |
| HL_9Q3R_040 | 1/A/1630:1636 | No text annotation | homologous HL_8B0X_069 HL_34789.6 | |
| HL_9Q3R_041 | 1/A/1691:1696 | No text annotation | homologous HL_8B0X_070 HL_61337.6 | |
| HL_9Q3R_042 | 1/A/1728:1731 | No text annotation | homologous HL_8B0X_071 HL_90436.5 | |
| HL_9Q3R_043 | 1/A/1752:1756 | No text annotation | homologous HL_8B0X_072 HL_80709.5 | |
| HL_9Q3R_044 | 1/A/1777:1787 | No text annotation | homologous HL_8B0X_073 HL_87681.3 | |
| HL_9Q3R_045 | 1/A/1806:1811 | No text annotation | homologous HL_8B0X_074 HL_37569.4 | |
| HL_9Q3R_046 | 1/A/1868:1873 | GNRA | homologous HL_7A0S_047 HL_34789.6 | |
| HL_9Q3R_047 | 1/A/1910:1920 | No text annotation | homologous HL_8B0X_076 HL_82185.3 | |
| HL_9Q3R_048 | 1/A/1949:1957 | No text annotation | homologous HL_8B0X_077 HL_33350.1 | |
| HL_9Q3R_049 | 1/A/2026:2037 | No text annotation | ||
| HL_9Q3R_052 | 1/A/2209:2215 | No text annotation | homologous HL_8B0X_079 HL_33632.1 | |
| HL_9Q3R_053 | 1/A/2248:2256 | LSU P loop | homologous HL_8B0X_080 HL_11974.4 | |
| HL_9Q3R_054 | 1/A/2264:2276 | No text annotation | homologous HL_8B0X_081 HL_02042.3 | |
| HL_9Q3R_055 | 1/A/2303:2313 | No text annotation | homologous HL_8B0X_082 NA | |
| HL_9Q3R_056 | 1/A/2324:2331 | No text annotation | homologous HL_8B0X_083 HL_52651.4 | |
| HL_9Q3R_057 | 1/A/2356:2361 | No text annotation | homologous HL_8B0X_084 HL_34789.6 | |
| HL_9Q3R_058 | 1/A/2374:2379 | No text annotation | homologous HL_8B0X_085 HL_34789.6 | |
| HL_9Q3R_059 | 1/A/2404:2413 | No text annotation | homologous HL_8B0X_086 HL_51853.2 | |
| HL_9Q3R_060 | 1/A/2471:2479 | No text annotation | homologous HL_8B0X_087 HL_52011.3 | |
| HL_9Q3R_061 | 1/A/2528:2535 | No text annotation | homologous HL_8B0X_088 HL_02262.1 | |
| HL_9Q3R_062 | 1/A/2551:2557 | LSU A loop | homologous HL_8B0X_089 HL_02262.1 | |
| HL_9Q3R_063 | 1/A/2594:2599 | No text annotation | homologous HL_8B0X_090 HL_34789.6 | |
| HL_9Q3R_064 | 1/A/2658:2663 | No text annotation | homologous HL_8B0X_091 HL_34789.6 | |
| HL_9Q3R_065 | 1/A/2701:2706 | No text annotation | homologous HL_8B0X_092 HL_12125.4 | |
| HL_9Q3R_066 | 1/A/2745:2759 | No text annotation | homologous HL_8B0X_093 HL_53269.4 | |
| HL_9Q3R_067 | 1/A/2796:2799 | No text annotation | homologous HL_8B0X_094 HL_01957.1 | |
| HL_9Q3R_068 | 1/A/2819:2827 | No text annotation | homologous HL_8B0X_095 HL_37889.3 | |
| HL_9Q3R_069 | 1/A/2856:2861 | No text annotation | homologous HL_8B0X_096 HL_34789.6 | |
| HL_9Q3R_070 | 1/B/34:48 | No text annotation | geometric HL_8B0X_102 HL_97756.4 | |
| HL_9Q3R_071 | 1/B/38:44 | No text annotation | homologous HL_8B0X_097 HL_59381.4 | |
| HL_9Q3R_072 | 1/B/86:90 | No text annotation | geometric HL_8B0X_098 HL_90436.5 | |
| HL_9Q3R_073 | 1/a/12:22 | No text annotation | homologous HL_8B0X_001 HL_73535.3 | |
| HL_9Q3R_075 | 1/a/158:163 | No text annotation | homologous HL_8B0X_002 HL_34789.6 | |
| HL_9Q3R_076 | 1/a/186:191 | No text annotation | homologous HL_8B0X_003 HL_34789.6 | |
| HL_9Q3R_078 | 1/a/259:267 | No text annotation | homologous HL_8B0X_005 HL_87268.4 | |
| HL_9Q3R_079 | 1/a/296:301 | No text annotation | homologous HL_8B0X_006 HL_34789.6 | |
| HL_9Q3R_080 | 1/a/320:333 | No text annotation | homologous HL_8B0X_007 HL_39665.1 | |
| HL_9Q3R_081 | 1/a/342:347 | No text annotation | homologous HL_8B0X_008 HL_61337.6 | |
| HL_9Q3R_082 | 1/a/379:384 | No text annotation | homologous HL_8B0X_009 HL_34789.6 | |
| HL_9Q3R_083 | 1/a/419:424 | No text annotation | homologous HL_8B0X_010 HL_61337.6 | |
| HL_9Q3R_084 | 1/a/462:470 | No text annotation | homologous HL_8B0X_011 HL_98423.5 | |
| HL_9Q3R_085 | 1/a/522:527 | No text annotation | homologous HL_8B0X_099 HL_34789.6 | |
| HL_9Q3R_086 | 1/a/617:623 | No text annotation | homologous HL_8B0X_013 HL_27656.1 | |
| HL_9Q3R_087 | 1/a/689:698 | No text annotation | homologous HL_8B0X_014 HL_38491.4 | |
| HL_9Q3R_088 | 1/a/726:731 | No text annotation | homologous HL_8B0X_015 HL_34789.6 | |
| HL_9Q3R_089 | 1/a/786:796 | No text annotation | homologous HL_8B0X_016 HL_38491.4 | |
| HL_9Q3R_090 | 1/a/862:867 | No text annotation | homologous HL_8B0X_017 HL_34789.6 | |
| HL_9Q3R_091 | 1/a/897:902 | No text annotation | homologous HL_8B0X_018 HL_34789.6 | |
| HL_9Q3R_092 | 1/a/963:972 | No text annotation | homologous HL_8B0X_019 HL_97521.3 | |
| HL_9Q3R_093 | 1/a/1012:1017 | No text annotation | homologous HL_8B0X_020 HL_34789.6 | |
| HL_9Q3R_094 | 1/a/1076:1081 | No text annotation | homologous HL_8B0X_021 HL_34789.6 | |
| HL_9Q3R_095 | 1/a/1089:1096 | No text annotation | homologous HL_8B0X_022 HL_63894.4 | |
| HL_9Q3R_096 | 1/a/1134:1140 | No text annotation | homologous HL_8B0X_023 HL_79773.1 | |
| HL_9Q3R_097 | 1/a/1165:1171 | No text annotation | homologous HL_8B0X_024 HL_34789.6 | |
| HL_9Q3R_098 | 1/a/1265:1270 | No text annotation | homologous HL_8B0X_025 HL_34789.6 | |
| HL_9Q3R_099 | 1/a/1314:1323 | No text annotation | homologous HL_8B0X_026 HL_93658.1 | |
| HL_9Q3R_100 | 1/a/1356:1366 | No text annotation | homologous HL_8B0X_027 HL_86432.3 | |
| HL_9Q3R_101 | 1/a/1449:1454 | No text annotation | homologous HL_8B0X_028 HL_61337.6 | |
| HL_9Q3R_102 | 1/a/1515:1520 | No text annotation | homologous HL_8B0X_029 HL_34789.6 | |
| HL_9Q3R_103 | 1/w/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_81376.4 | |
| HL_9Q3R_104 | 1/w/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_33597.7 | |
| HL_9Q3R_105 | 1/x/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_9Q3R_106 | 1/x/31:39 | No text annotation | homologous HL_5J8B_109 HL_81376.4 | |
| HL_9Q3R_107 | 1/x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AXM_003 HL_33597.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9Q3R_050 | No text annotation | ||
| HL_9Q3R_051 | No text annotation | ||
| HL_9Q3R_074 | No text annotation | ||
| HL_9Q3R_077 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9Q3R_001 | 1/A/24:30, 1/A/510:516 | No text annotation | homologous IL_8B0X_065 IL_22311.3 | |
| IL_9Q3R_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_8B0X_066 IL_14190.4 | |
| IL_9Q3R_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_8B0X_067 IL_98469.1 | |
| IL_9Q3R_004 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_9Q3R_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_8B0X_069 IL_15011.5 | |
| IL_9Q3R_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8B0X_070 IL_62167.5 | |
| IL_9Q3R_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8B0X_071 IL_02666.3 | |
| IL_9Q3R_008 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_8B0X_072 NA | |
| IL_9Q3R_009 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_8B0X_073 IL_22028.1 | |
| IL_9Q3R_010 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_8B0X_074 IL_76658.1 | |
| IL_9Q3R_011 | 1/A/481:484, 1/A/496:509 | No text annotation | geometric IL_8B0X_075 IL_44923.3 | |
| IL_9Q3R_012 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_8B0X_076 IL_58355.4 | |
| IL_9Q3R_013 | 1/A/564:566, 1/A/575:577 | No text annotation | homologous IL_8B0X_077 IL_01334.1 | |
| IL_9Q3R_014 | 1/A/606:610, 1/A/618:622 | No text annotation | homologous IL_8B0X_078 IL_66798.3 | |
| IL_9Q3R_015 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | homologous IL_8B0X_079 IL_01003.6 | |
| IL_9Q3R_016 | 1/A/674:678, 1/A/799:806 | No text annotation | homologous IL_8B0X_080 IL_73855.3 | |
| IL_9Q3R_017 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_8B0X_081 IL_14190.4 | |
| IL_9Q3R_018 | 1/A/702:703, 1/A/728:730 | Single bulged G | homologous IL_8B0X_082 IL_28408.4 | |
| IL_9Q3R_019 | 1/A/703:707, 1/A/724:728 | No text annotation | homologous IL_8B0X_083 IL_15190.4 | |
| IL_9Q3R_020 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_8B0X_084 IL_48076.10 | |
| IL_9Q3R_021 | 1/A/775:777, 1/A/787:791 | No text annotation | homologous IL_8B0X_085 IL_89509.3 | |
| IL_9Q3R_022 | 1/A/844:847, 1/A/933:934 | No text annotation | geometric IL_8B0X_087 IL_79144.1 | |
| IL_9Q3R_023 | 1/A/844:848, 1/A/930:934 | No text annotation | ||
| IL_9Q3R_024 | 1/A/847:848, 1/A/930:933 | No text annotation | homologous IL_8B0X_088 IL_36175.2 | |
| IL_9Q3R_025 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_8B0X_089 IL_15011.5 | |
| IL_9Q3R_026 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8B0X_090 IL_94128.3 | |
| IL_9Q3R_027 | 1/A/862:863, 1/A/913:915 | Single bulged G | homologous IL_8B0X_091 IL_28408.4 | |
| IL_9Q3R_028 | 1/A/864:868, 1/A/909:912 | No text annotation | homologous IL_8B0X_092 IL_16301.3 | |
| IL_9Q3R_029 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_8B0X_093 IL_71625.5 | |
| IL_9Q3R_030 | 1/A/875:879, 1/A/898:902 | No text annotation | homologous IL_8B0X_094 IL_87767.4 | |
| IL_9Q3R_031 | 1/A/880:881, 1/A/895:897 | Single bulged A | homologous IL_8B0X_095 IL_14190.4 | |
| IL_9Q3R_032 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_8B0X_096 IL_05642.5 | |
| IL_9Q3R_033 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_8B0X_097 IL_08938.3 | |
| IL_9Q3R_034 | 1/A/1004:1011, 1/A/1150:1151 | No text annotation | homologous IL_8B0X_098 IL_46868.2 | |
| IL_9Q3R_035 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_8B0X_099 IL_97561.7 | |
| IL_9Q3R_036 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | homologous IL_8B0X_100 IL_57188.6 | |
| IL_9Q3R_037 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | homologous IL_8B0X_101 IL_50715.4 | |
| IL_9Q3R_038 | 1/A/1031:1034, 1/A/1121:1123 | No text annotation | homologous IL_8B0X_102 IL_76400.2 | |
| IL_9Q3R_039 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_8B0X_103 IL_15225.4 | |
| IL_9Q3R_040 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn | homologous IL_8B0X_104 IL_99692.4 | |
| IL_9Q3R_041 | 1/A/1057:1065, 1/A/1074:1081 | No text annotation | ||
| IL_9Q3R_042 | 1/A/1087:1090, 1/A/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_9Q3R_043 | 1/A/1196:1198, 1/A/1247:1250 | No text annotation | homologous IL_8B0X_105 IL_84227.1 | |
| IL_9Q3R_044 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_8B0X_106 NA | |
| IL_9Q3R_045 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_8B0X_107 IL_90775.3 | |
| IL_9Q3R_046 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8B0X_108 IL_62167.5 | |
| IL_9Q3R_047 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | geometric IL_8B0X_109 IL_74641.4 | |
| IL_9Q3R_048 | 1/A/1319:1323, 1/A/1331:1333 | No text annotation | homologous IL_8B0X_110 IL_63596.14 | |
| IL_9Q3R_049 | 1/A/1351:1355, 1/A/1376:1380 | No text annotation | homologous IL_8B0X_111 IL_89021.4 | |
| IL_9Q3R_050 | 1/A/1357:1361, 1/A/1370:1374 | No text annotation | homologous IL_8B0X_112 IL_05821.3 | |
| IL_9Q3R_051 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_8B0X_113 NA | |
| IL_9Q3R_052 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_8B0X_114 IL_08938.3 | |
| IL_9Q3R_053 | 1/A/1432:1435, 1/A/1557:1561 | No text annotation | homologous IL_8B0X_115 IL_60418.1 | |
| IL_9Q3R_054 | 1/A/1437:1440, 1/A/1551:1555 | No text annotation | homologous IL_8B0X_116 IL_74317.1 | |
| IL_9Q3R_055 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_8B0X_117 IL_97561.7 | |
| IL_9Q3R_056 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_8B0X_118 IL_68574.5 | |
| IL_9Q3R_057 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tWH-tHS | homologous IL_8B0X_119 IL_38862.5 | |
| IL_9Q3R_058 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation | homologous IL_8B0X_120 IL_52564.1 | |
| IL_9Q3R_059 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_8B0X_121 IL_14190.4 | |
| IL_9Q3R_060 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_8B0X_122 IL_45790.3 | |
| IL_9Q3R_061 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_8B0X_123 IL_12566.6 | |
| IL_9Q3R_062 | 1/A/1663:1665, 1/A/1995:1997 | No text annotation | homologous IL_8B0X_124 IL_10432.3 | |
| IL_9Q3R_063 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_8B0X_125 IL_74641.4 | |
| IL_9Q3R_064 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | geometric IL_8B0X_180 IL_80252.3 | |
| IL_9Q3R_065 | 1/A/1669:1674, 1/A/1990:1993 | No text annotation | homologous IL_8B0X_126 IL_28217.3 | |
| IL_9Q3R_066 | 1/A/1686:1691, 1/A/1696:1702 | No text annotation | homologous IL_8B0X_127 IL_20700.3 | |
| IL_9Q3R_067 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_8B0X_128 IL_82100.1 | |
| IL_9Q3R_068 | 1/A/1720:1724, 1/A/1736:1740 | No text annotation | homologous IL_8B0X_129 IL_70744.1 | |
| IL_9Q3R_069 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C | homologous IL_8B0X_130 IL_05642.5 | |
| IL_9Q3R_070 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_8B0X_131 IL_14190.4 | |
| IL_9Q3R_071 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_8B0X_132 IL_17069.6 | |
| IL_9Q3R_072 | 1/A/1837:1840, 1/A/1902:1903 | No text annotation | homologous IL_8B0X_133 IL_55206.3 | |
| IL_9Q3R_073 | 1/A/1841:1842, 1/A/1898:1901 | No text annotation | homologous IL_8B0X_134 IL_71421.5 | |
| IL_9Q3R_074 | 1/A/1846:1849, 1/A/1893:1894 | No text annotation | homologous IL_8B0X_135 IL_73108.4 | |
| IL_9Q3R_075 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_8B0X_181 NA | |
| IL_9Q3R_076 | 1/A/1864:1867, 1/A/1874:1878 | No text annotation | homologous IL_8B0X_136 IL_77691.7 | |
| IL_9Q3R_077 | 1/A/1933:1934, 1/A/1964:1967 | No text annotation | geometric IL_8B0X_137 IL_24886.4 | |
| IL_9Q3R_078 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9Q3R_079 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_8B0X_139 IL_48076.10 | |
| IL_9Q3R_080 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_8B0X_140 IL_80025.3 | |
| IL_9Q3R_081 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_8B0X_182 IL_97561.7 | |
| IL_9Q3R_082 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_8B0X_143 IL_98469.1 | |
| IL_9Q3R_083 | 1/A/2081:2083, 1/A/2236:2239 | No text annotation | homologous IL_8B0X_144 IL_87316.4 | |
| IL_9Q3R_084 | 1/A/2085:2087, 1/A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_8B0X_145 IL_71625.5 | |
| IL_9Q3R_085 | 1/A/2103:2105, 1/A/2184:2186 | Isolated non-canonical cWW pair | geometric IL_9DID_001 IL_71625.5 | |
| IL_9Q3R_087 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_8B0X_146 IL_97561.7 | |
| IL_9Q3R_088 | 1/A/2297:2299, 1/A/2317:2321 | No text annotation | geometric IL_8B0X_147 IL_14250.3 | |
| IL_9Q3R_089 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_8B0X_148 IL_58355.4 | |
| IL_9Q3R_090 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U | homologous IL_8B0X_149 IL_97561.7 | |
| IL_9Q3R_091 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | homologous IL_8B0X_183 IL_15011.5 | |
| IL_9Q3R_092 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | homologous IL_8B0X_184 IL_48076.10 | |
| IL_9Q3R_093 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.10 | |
| IL_9Q3R_094 | 1/A/2459:2461, 1/A/2489:2493 | No text annotation | homologous IL_8B0X_152 IL_36931.4 | |
| IL_9Q3R_095 | 1/A/2466:2470, 1/A/2480:2484 | No text annotation | homologous IL_8B0X_153 IL_87767.4 | |
| IL_9Q3R_096 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.4 | |
| IL_9Q3R_097 | 1/A/2510:2512, 1/A/2574:2578 | No text annotation | homologous IL_8B0X_155 IL_30722.1 | |
| IL_9Q3R_098 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | homologous IL_8B0X_156 IL_44609.4 | |
| IL_9Q3R_099 | 1/A/2522:2523, 1/A/2540:2543 | No text annotation | homologous IL_8B0X_157 IL_94991.3 | |
| IL_9Q3R_100 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_8B0X_159 IL_14190.4 | |
| IL_9Q3R_101 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation | homologous IL_8B0X_160 IL_04638.4 | |
| IL_9Q3R_102 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8B0X_161 IL_16458.6 | |
| IL_9Q3R_103 | 1/A/2680:2684, 1/A/2725:2727 | No text annotation | homologous IL_8B0X_162 IL_63596.14 | |
| IL_9Q3R_104 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_8B0X_163 IL_82016.1 | |
| IL_9Q3R_105 | 1/A/2695:2696, 1/A/2711:2714 | No text annotation | homologous IL_8B0X_164 IL_44609.4 | |
| IL_9Q3R_106 | 1/A/2737:2742, 1/A/2762:2767 | No text annotation | homologous IL_8B0X_165 IL_91079.1 | |
| IL_9Q3R_107 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | homologous IL_8B0X_166 IL_14190.4 | |
| IL_9Q3R_108 | 1/A/2806:2812, 1/A/2888:2892 | No text annotation | ||
| IL_9Q3R_109 | 1/A/2838:2839, 1/A/2878:2880 | No text annotation | homologous IL_8B0X_168 IL_77710.2 | |
| IL_9Q3R_110 | 1/A/2843:2846, 1/A/2870:2874 | No text annotation | homologous IL_8B0X_169 IL_60988.4 | |
| IL_9Q3R_111 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation | homologous IL_8B0X_170 IL_48489.3 | |
| IL_9Q3R_112 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_8B0X_171 IL_14190.4 | |
| IL_9Q3R_113 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_8B0X_172 IL_18472.5 | |
| IL_9Q3R_114 | 1/B/30:31, 1/B/51:54 | No text annotation | homologous IL_8QYX_167 IL_73108.4 | |
| IL_9Q3R_115 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | homologous IL_8B0X_174 IL_58103.14 | |
| IL_9Q3R_116 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_8B0X_175 IL_71138.1 | |
| IL_9Q3R_117 | 1/a/30:32, 1/a/552:553 | Single bulged G | homologous IL_8B0X_001 IL_28408.4 | |
| IL_9Q3R_118 | 1/a/44:45, 1/a/396:398 | Single bulged A | homologous IL_8B0X_002 IL_14190.4 | |
| IL_9Q3R_119 | 1/a/47:52, 1/a/359:361 | No text annotation | geometric IL_8B0X_003 IL_32983.3 | |
| IL_9Q3R_120 | 1/a/54:56, 1/a/356:357 | Minor groove platform | homologous IL_8B0X_004 IL_41261.1 | |
| IL_9Q3R_121 | 1/a/63:66, 1/a/103:104 | No text annotation | homologous IL_8B0X_005 IL_71421.5 | |
| IL_9Q3R_122 | 1/a/67:69, 1/a/99:102 | No text annotation | homologous IL_8B0X_006 IL_05502.2 | |
| IL_9Q3R_123 | 1/a/70:73, 1/a/97:98 | No text annotation | homologous IL_8B0X_007 IL_87975.2 | |
| IL_9Q3R_124 | 1/a/75:76, 1/a/93:95 | GG cWH outside loop | homologous IL_8B0X_008 IL_28408.4 | |
| IL_9Q3R_125 | 1/a/128:131, 1/a/231:233 | No text annotation | homologous IL_8B0X_009 IL_76400.2 | |
| IL_9Q3R_126 | 1/a/132:136, 1/a/227:230 | Minor groove platform related | homologous IL_8B0X_010 IL_60988.4 | |
| IL_9Q3R_127 | 1/a/144:146, 1/a/176:178 | Isolated cWH basepair | homologous IL_8B0X_011 IL_10892.4 | |
| IL_9Q3R_128 | 1/a/147:153, 1/a/168:175 | No text annotation | homologous IL_8B0X_012 IL_24485.3 | |
| IL_9Q3R_129 | 1/a/203:206, 1/a/213:214 | No text annotation | geometric IL_9E6Q_071 IL_87975.2 | |
| IL_9Q3R_130 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking | homologous IL_8B0X_013 IL_46174.6 | |
| IL_9Q3R_131 | 1/a/249:252, 1/a/274:275 | No text annotation | homologous IL_8B0X_014 IL_22002.1 | |
| IL_9Q3R_132 | 1/a/292:293, 1/a/304:308 | No text annotation | homologous IL_8B0X_015 IL_06671.3 | |
| IL_9Q3R_133 | 1/a/367:369, 1/a/392:393 | Single bulged U | homologous IL_8B0X_016 IL_97561.7 | |
| IL_9Q3R_134 | 1/a/371:375, 1/a/389:390 | No text annotation | homologous IL_8B0X_017 IL_26900.3 | |
| IL_9Q3R_135 | 1/a/375:376, 1/a/387:389 | Single bulged G | homologous IL_8B0X_018 IL_28408.4 | |
| IL_9Q3R_136 | 1/a/409:416, 1/a/427:433 | No text annotation | homologous IL_8B0X_019 IL_62329.1 | |
| IL_9Q3R_137 | 1/a/440:442, 1/a/492:497 | No text annotation | geometric IL_8B0X_020 IL_02111.1 | |
| IL_9Q3R_138 | 1/a/446:450, 1/a/483:488 | tWW-tWH-tHS | homologous IL_8B0X_021 IL_82100.1 | |
| IL_9Q3R_139 | 1/a/450:455, 1/a/477:483 | No text annotation | homologous IL_8B0X_022 NA | |
| IL_9Q3R_140 | 1/a/504:511, 1/a/540:541 | No text annotation | homologous IL_8B0X_023 IL_11411.3 | |
| IL_9Q3R_141 | 1/a/515:521, 1/a/528:536 | Kink-turn related | homologous IL_8B0X_024 IL_52042.3 | |
| IL_9Q3R_142 | 1/a/569:575, 1/a/880:881 | No text annotation | homologous IL_8B0X_025 IL_20847.3 | |
| IL_9Q3R_143 | 1/a/580:584, 1/a/757:761 | No text annotation | homologous IL_8B0X_026 IL_05821.3 | |
| IL_9Q3R_144 | 1/a/594:596, 1/a/644:645 | Major groove platform | homologous IL_8B0X_027 IL_48076.10 | |
| IL_9Q3R_145 | 1/a/597:598, 1/a/640:643 | No text annotation | homologous IL_8B0X_028 IL_73108.4 | |
| IL_9Q3R_146 | 1/a/605:612, 1/a/628:633 | No text annotation | homologous IL_8B0X_029 IL_04211.1 | |
| IL_9Q3R_147 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW | geometric IL_8B0X_030 IL_74641.4 | |
| IL_9Q3R_148 | 1/a/659:660, 1/a/745:747 | Single stack bend | homologous IL_8B0X_031 IL_15011.5 | |
| IL_9Q3R_149 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs | homologous IL_8B0X_032 IL_15225.4 | |
| IL_9Q3R_150 | 1/a/673:677, 1/a/713:717 | No text annotation | homologous IL_8B0X_176 IL_71154.5 | |
| IL_9Q3R_151 | 1/a/684:688, 1/a/699:706 | Kink-turn | homologous IL_8B0X_034 IL_71972.2 | |
| IL_9Q3R_152 | 1/a/774:778, 1/a/804:805 | No text annotation | homologous IL_8B0X_035 IL_29346.3 | |
| IL_9Q3R_153 | 1/a/779:783, 1/a/799:803 | No text annotation | homologous IL_8B0X_036 IL_05821.3 | |
| IL_9Q3R_154 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8B0X_037 IL_84044.3 | |
| IL_9Q3R_155 | 1/a/922:923, 1/a/1393:1395 | Single bulged A | homologous IL_8B0X_038 IL_14190.4 | |
| IL_9Q3R_156 | 1/a/925:927, 1/a/1390:1391 | Single bulged G | homologous IL_8B0X_039 IL_28408.4 | |
| IL_9Q3R_157 | 1/a/933:935, 1/a/1380:1384 | No text annotation | homologous IL_8B0X_040 IL_03866.1 | |
| IL_9Q3R_158 | 1/a/953:954, 1/a/1226:1228 | Minor groove platform | homologous IL_8B0X_041 IL_98469.1 | |
| IL_9Q3R_159 | 1/a/993:997, 1/a/1044:1045 | No text annotation | geometric IL_8B0X_042 IL_49794.1 | |
| IL_9Q3R_160 | 1/a/998:999, 1/a/1041:1043 | Single stack bend | homologous IL_8B0X_043 IL_15011.5 | |
| IL_9Q3R_161 | 1/a/1003:1006, 1/a/1023:1037 | No text annotation | ||
| IL_9Q3R_162 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U | homologous IL_8B0X_044 IL_97561.7 | |
| IL_9Q3R_163 | 1/a/1052:1056, 1/a/1204:1206 | No text annotation | homologous IL_8B0X_046 IL_82453.3 | |
| IL_9Q3R_164 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform | homologous IL_8B0X_047 IL_41261.1 | |
| IL_9Q3R_165 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged A | homologous IL_8B0X_048 IL_14190.4 | |
| IL_9Q3R_166 | 1/a/1061:1063, 1/a/1193:1195 | Isolated non-canonical cWW pair | homologous IL_8B0X_049 IL_71625.5 | |
| IL_9Q3R_167 | 1/a/1124:1128, 1/a/1144:1149 | No text annotation | homologous IL_8B0X_050 IL_38603.1 | |
| IL_9Q3R_168 | 1/a/1129:1132, 1/a/1142:1143 | No text annotation | homologous IL_8B0X_051 IL_87975.2 | |
| IL_9Q3R_169 | 1/a/1158:1161, 1/a/1175:1181 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9Q3R_170 | 1/a/1247:1253, 1/a/1284:1290 | No text annotation | homologous IL_8B0X_053 IL_12056.1 | |
| IL_9Q3R_171 | 1/a/1255:1258, 1/a/1277:1282 | No text annotation | homologous IL_8B0X_054 IL_08849.1 | |
| IL_9Q3R_172 | 1/a/1259:1263, 1/a/1272:1276 | No text annotation | homologous IL_8B0X_055 IL_87767.4 | |
| IL_9Q3R_173 | 1/a/1303:1308, 1/a/1329:1334 | No text annotation | homologous IL_8B0X_056 IL_28265.1 | |
| IL_9Q3R_174 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation | homologous IL_8B0X_057 IL_18228.3 | |
| IL_9Q3R_175 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation | homologous IL_8B0X_058 IL_25873.4 | |
| IL_9Q3R_176 | 1/a/1405:1407, 1/a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_8B0X_177 IL_01003.6 | |
| IL_9Q3R_177 | 1/a/1407:1409, 1/a/1491:1494 | No text annotation | geometric IL_9H3G_236 IL_29925.3 | |
| IL_9Q3R_178 | 1/a/1412:1414, 1/a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_8B0X_060 IL_01003.6 | |
| IL_9Q3R_179 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared | homologous IL_8B0X_061 IL_58355.4 | |
| IL_9Q3R_180 | 1/a/1430:1435, 1/a/1466:1470 | No text annotation | homologous IL_8B0X_062 IL_47352.3 | |
| IL_9Q3R_181 | 1/a/1440:1442, 1/a/1460:1461 | Minor groove platform | homologous IL_8B0X_063 IL_41261.1 | |
| IL_9Q3R_182 | 1/a/1445:1448, 1/a/1455:1457 | No text annotation | homologous IL_8B0X_064 IL_05502.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9Q3R_086 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9Q3R_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | geometric J3_8B0X_014 J3_68715.3 | |
| J3_9Q3R_002 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_8B0X_032 J3_17917.3 | |
| J3_9Q3R_003 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_8B0X_033 J3_07616.3 | |
| J3_9Q3R_004 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_8B0X_015 J3_01004.3 | |
| J3_9Q3R_005 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_8B0X_034 J3_77124.1 | |
| J3_9Q3R_006 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_8B0X_016 J3_46658.3 | |
| J3_9Q3R_007 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_8B0X_017 J3_69816.3 | |
| J3_9Q3R_008 | 1/A/1055:1057, 1/A/1081:1087, 1/A/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_37832.2 | |
| J3_9Q3R_009 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_8B0X_018 J3_32852.7 | |
| J3_9Q3R_010 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_8B0X_019 J3_47341.1 | |
| J3_9Q3R_011 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_8B0X_020 NA | |
| J3_9Q3R_012 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_8B0X_035 J3_34864.3 | |
| J3_9Q3R_013 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation | homologous J3_8B0X_021 J3_17460.1 | |
| J3_9Q3R_015 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_8B0X_036 J3_04772.3 | |
| J3_9Q3R_016 | 1/A/2295:2297, 1/A/2321:2323, 1/A/2332:2337 | No text annotation | geometric J3_8B0X_022 J3_05327.3 | |
| J3_9Q3R_017 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_8B0X_037 NA | |
| J3_9Q3R_018 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_8B0X_023 J3_32601.6 | |
| J3_9Q3R_019 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_8B0X_024 NA | |
| J3_9Q3R_020 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_8B0X_025 NA | |
| J3_9Q3R_021 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation | homologous J3_8B0X_026 NA | |
| J3_9Q3R_022 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation | geometric J3_8B0X_001 J3_58657.3 | |
| J3_9Q3R_023 | 1/a/46:52, 1/a/359:367, 1/a/393:395 | No text annotation | homologous J3_8B0X_027 J3_63856.3 | |
| J3_9Q3R_024 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation | geometric J3_8B0X_002 J3_01633.3 | |
| J3_9Q3R_025 | 1/a/586:588, 1/a/651:655, 1/a/751:755 | No text annotation | homologous J3_8B0X_028 J3_17385.7 | |
| J3_9Q3R_026 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation | homologous J3_8B0X_003 J3_74074.1 | |
| J3_9Q3R_027 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation | homologous J3_8B0X_004 J3_02285.1 | |
| J3_9Q3R_028 | 1/a/936:939, 1/a/1344:1350, 1/a/1372:1379 | No text annotation | homologous J3_8B0X_005 J3_85722.3 | |
| J3_9Q3R_029 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation | homologous J3_8B0X_006 J3_44359.3 | |
| J3_9Q3R_030 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation | homologous J3_8B0X_007 J3_88451.3 | |
| J3_9Q3R_031 | 1/a/990:993, 1/a/1045:1047, 1/a/1210:1215 | No text annotation | geometric J3_8B0X_008 J3_84394.1 | |
| J3_9Q3R_032 | 1/a/990:997, 1/a/1044:1047, 1/a/1210:1215 | No text annotation | homologous J3_8B0X_029 J3_28881.1 | |
| J3_9Q3R_033 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation | homologous J3_8B0X_010 J3_01343.1 | |
| J3_9Q3R_034 | 1/a/1073:1074, 1/a/1083:1086, 1/a/1099:1102 | No text annotation | homologous J3_8B0X_030 J3_11018.1 | |
| J3_9Q3R_035 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation | geometric J3_8B0X_012 J3_82365.7 | |
| J3_9Q3R_036 | 1/a/1116:1118, 1/a/1155:1161, 1/a/1175:1184 | No text annotation | homologous J3_8B0X_031 J3_40706.2 | |
| J3_9Q3R_037 | 1/a/1237:1241, 1/a/1296:1303, 1/a/1334:1337 | No text annotation | homologous J3_8B0X_013 J3_03192.3 | |
| J4_9Q3R_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_8B0X_004 J4_94698.3 | |
| J4_9Q3R_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_8B0X_005 J4_16174.1 | |
| J4_9Q3R_003 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_8B0X_006 NA | |
| J4_9Q3R_004 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_8B0X_007 J4_19484.1 | |
| J4_9Q3R_005 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | ||
| J4_9Q3R_006 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_8B0X_009 J4_48150.2 | |
| J4_9Q3R_007 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_8B0X_010 J4_75575.3 | |
| J4_9Q3R_008 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_8B0X_011 J4_61477.6 | |
| J4_9Q3R_009 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_8B0X_012 J4_42306.3 | |
| J4_9Q3R_010 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_8B0X_013 J4_98139.1 | |
| J4_9Q3R_011 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_8B0X_014 J4_77044.5 | |
| J4_9Q3R_012 | 1/a/115:122, 1/a/239:240, 1/a/286:289, 1/a/311:312 | No text annotation | homologous J4_8B0X_001 J4_90044.1 | |
| J4_9Q3R_013 | 1/a/142:144, 1/a/178:184, 1/a/193:198, 1/a/219:221 | No text annotation | homologous J4_8B0X_002 NA | |
| J4_9Q3R_014 | 1/a/575:577, 1/a/764:769, 1/a/810:821, 1/a/879:880 | No text annotation | homologous J4_8B0X_003 J4_14595.3 | |
| J4_9Q3R_015 | 1/w/7:10, 1/w/25:27, 1/w/43:49, 1/w/65:66 | tRNA junction | homologous J4_5HR6_001 J4_95067.2 | |
| J4_9Q3R_016 | 1/x/7:10, 1/x/25:27, 1/x/43:49, 1/x/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_95067.2 | |
| J5_9Q3R_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_8B0X_004 J5_27223.3 | |
| J5_9Q3R_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_8B0X_005 J5_43153.6 | |
| J5_9Q3R_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_8B0X_006 J5_74302.6 | |
| J5_9Q3R_004 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_8B0X_007 J5_99177.3 | |
| J5_9Q3R_005 | 1/A/2057:2064, 1/A/2446:2453, 1/A/2500:2507, 1/A/2582:2588, 1/A/2606:2611 | No text annotation | ||
| J5_9Q3R_006 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2282, 1/A/2427:2435 | No text annotation | homologous J5_8B0X_009 J5_39529.2 | |
| J5_9Q3R_007 | 1/a/36:39, 1/a/403:406, 1/a/436:440, 1/a/497:500, 1/a/545:548 | No text annotation | ||
| J5_9Q3R_008 | 1/a/36:39, 1/a/403:406, 1/a/436:442, 1/a/492:500, 1/a/545:548 | No text annotation | homologous J5_8B0X_002 NA | |
| J5_9Q3R_009 | 1/a/58:61, 1/a/106:113, 1/a/314:316, 1/a/337:339, 1/a/350:354 | No text annotation | homologous J5_8B0X_003 J5_58574.3 | |
| J6_9Q3R_001 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_9Q3R_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_9Q3R_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_9Q3R_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9Q3R_014 | No text annotation |
Coloring options: