HL_9Q3R_056
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q3R_056 not in the Motif Atlas
- Homologous match to HL_8B0X_083
- Geometric discrepancy: 0.0585
- The information below is about HL_8B0X_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
9Q3R|1|A|U|2324
9Q3R|1|A|G|2325
9Q3R|1|A|C|2326
9Q3R|1|A|A|2327
9Q3R|1|A|A|2328
9Q3R|1|A|U|2329
9Q3R|1|A|G|2330
9Q3R|1|A|G|2331
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL5
- Chain O
- Large ribosomal subunit protein uL16
- Chain Y
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
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