HL_9Q3R_060

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3R_060 not in the Motif Atlas

Homologous match to HL_8B0X_087

Geometric discrepancy: 0.1021

The information below is about HL_8B0X_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9Q3R|1|A|A|2471
9Q3R|1|A|G|2472
9Q3R|1|A|U|2473
9Q3R|1|A|U|2474
9Q3R|1|A|C|2475
9Q3R|1|A|A|2476
9Q3R|1|A|U|2477
9Q3R|1|A|A|2478
9Q3R|1|A|U|2479

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6