HL_9Q3R_078

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9Q3R|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3R_078 not in the Motif Atlas

Homologous match to HL_8B0X_005

Geometric discrepancy: 0.0502

The information below is about HL_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9Q3R|1|a|G|259
9Q3R|1|a|G|260
9Q3R|1|a|U|261
9Q3R|1|a|A|262
9Q3R|1|a|A|263
9Q3R|1|a|C|264
9Q3R|1|a|G|265
9Q3R|1|a|G|266
9Q3R|1|a|C|267

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20