HL_9Q3R_084

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9Q3R|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3R_084 not in the Motif Atlas

Homologous match to HL_8B0X_011

Geometric discrepancy: 0.3128

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9Q3R|1|a|G|462
9Q3R|1|a|U|463
9Q3R|1|a|U|464
9Q3R|1|a|A|465
9Q3R|1|a|A|466
9Q3R|1|a|U|467
9Q3R|1|a|A|468
9Q3R|1|a|C|469
9Q3R|1|a|C|470

Current chains

Chain a

16S Ribosomal RNA

Nearby chains