HL_9Q3R_105
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9Q3R|1|x|C|16, 9Q3R|1|x|G|18, 9Q3R|1|x|G|19, 9Q3R|1|x|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q3R_105 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1678
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9Q3R|1|x|C|13
9Q3R|1|x|A|14
9Q3R|1|x|G|15
9Q3R|1|x|C|16
9Q3R|1|x|C|17
9Q3R|1|x|U|17|||A
9Q3R|1|x|G|18
9Q3R|1|x|G|19
9Q3R|1|x|U|20
9Q3R|1|x|A|21
9Q3R|1|x|G|22
Current chains
- Chain x
- P-site initiator tRNA fMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- Large ribosomal subunit protein uL5
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