HL_9Q6Q_013

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

9Q6Q|1|1A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6Q_013 not in the Motif Atlas

Homologous match to HL_8B0X_045

Geometric discrepancy: 0.1394

The information below is about HL_8B0X_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9Q6Q|1|1A|G|410
9Q6Q|1|1A|G|411
9Q6Q|1|1A|A|412
9Q6Q|1|1A|C|413
9Q6Q|1|1A|C|414
9Q6Q|1|1A|A|415
9Q6Q|1|1A|C|416
9Q6Q|1|1A|C|417

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15