HL_9Q6Q_109

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

9Q6Q|1|2A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6Q_109 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1843

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9Q6Q|1|2A|U|305
9Q6Q|1|2A|U|306
9Q6Q|1|2A|G|307
9Q6Q|1|2A|G|308
9Q6Q|1|2A|G|309
9Q6Q|1|2A|A|310
9Q6Q|1|2A|A|311
9Q6Q|1|2A|G|312

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Y

50S ribosomal protein L24