HL_9Q6R_136

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9Q6R|1|2A|A|1616, 9Q6R|1|2A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6R_136 not in the Motif Atlas

Homologous match to HL_8B0X_068

Geometric discrepancy: 0.0644

The information below is about HL_8B0X_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9Q6R|1|2A|C|1612
9Q6R|1|2A|G|1613
9Q6R|1|2A|A|1614
9Q6R|1|2A|C|1615
9Q6R|1|2A|A|1616
9Q6R|1|2A|C|1617
9Q6R|1|2A|A|1618
9Q6R|1|2A|G|1619

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2W

50S ribosomal protein L22