HL_9Q6R_149

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9Q6R|1|2A|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6R_149 not in the Motif Atlas

Homologous match to HL_8B0X_080

Geometric discrepancy: 0.0728

The information below is about HL_8B0X_080

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9Q6R|1|2A|C|2248
9Q6R|1|2A|U|2249
9Q6R|1|2A|G|2250
9Q6R|1|2A|OMG|2251
9Q6R|1|2A|G|2252
9Q6R|1|2A|G|2253
9Q6R|1|2A|C|2254
9Q6R|1|2A|G|2255
9Q6R|1|2A|G|2256

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16