HL_9Q6R_150

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9Q6R|1|2A|A|2268, 9Q6R|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6R_150 not in the Motif Atlas

Homologous match to HL_8B0X_081

Geometric discrepancy: 0.0835

The information below is about HL_8B0X_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9Q6R|1|2A|C|2264
9Q6R|1|2A|U|2265
9Q6R|1|2A|A|2266
9Q6R|1|2A|A|2267
9Q6R|1|2A|A|2268
9Q6R|1|2A|A|2269
9Q6R|1|2A|G|2270
9Q6R|1|2A|G|2271
9Q6R|1|2A|U|2272
9Q6R|1|2A|A|2273
9Q6R|1|2A|A|2274
9Q6R|1|2A|C|2275
9Q6R|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25