HL_9Q6S_183

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9Q6S|1|2a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6S_183 not in the Motif Atlas

Homologous match to HL_8B0X_016

Geometric discrepancy: 0.1047

The information below is about HL_8B0X_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9Q6S|1|2a|G|786
9Q6S|1|2a|A|787
9Q6S|1|2a|U|788
9Q6S|1|2a|U|789
9Q6S|1|2a|A|790
9Q6S|1|2a|G|791
9Q6S|1|2a|A|792
9Q6S|1|2a|U|793
9Q6S|1|2a|A|794
9Q6S|1|2a|C|795
9Q6S|1|2a|C|796

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2y

Ribosome-associated inhibitor A