HL_9Q6U_137

3D structure

PDB id

9Q6U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

9Q6U|1|2A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6U_137 not in the Motif Atlas

Homologous match to HL_7A0S_073

Geometric discrepancy: 0.2247

The information below is about HL_7A0S_073

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9Q6U|1|2A|C|1631
9Q6U|1|2A|A|1631|||A
9Q6U|1|2A|A|1632
9Q6U|1|2A|G|1633
9Q6U|1|2A|A|1634
9Q6U|1|2A|G|1635

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains