HL_9Q6V_024

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

9Q6V|1|1A|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6V_024 not in the Motif Atlas

Homologous match to HL_8B0X_056

Geometric discrepancy: 0.4484

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52776.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

3

Unit IDs

9Q6V|1|1A|C|884
9Q6V|1|1A|C|885
9Q6V|1|1A|C|886
9Q6V|1|1A|A|887
9Q6V|1|1A|C|888
9Q6V|1|1A|C|889
9Q6V|1|1A|A|890
9Q6V|1|1A|G|892

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13