HL_9Q6V_145

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9Q6V|1|2A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6V_145 not in the Motif Atlas

Homologous match to HL_8B0X_077

Geometric discrepancy: 0.0625

The information below is about HL_8B0X_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9Q6V|1|2A|G|1949
9Q6V|1|2A|G|1950
9Q6V|1|2A|U|1951
9Q6V|1|2A|A|1952
9Q6V|1|2A|A|1953
9Q6V|1|2A|G|1954
9Q6V|1|2A|U|1955
9Q6V|1|2A|U|1956
9Q6V|1|2A|C|1957

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14

Chain 2a

Small subunit ribosomal RNA; SSU rRNA