HL_9Q6V_181

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6V_181 not in the Motif Atlas

Homologous match to HL_8B0X_014

Geometric discrepancy: 0.0908

The information below is about HL_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9Q6V|1|2a|C|689
9Q6V|1|2a|G|690
9Q6V|1|2a|G|691
9Q6V|1|2a|U|692
9Q6V|1|2a|G|693
9Q6V|1|2a|A|694
9Q6V|1|2a|A|695
9Q6V|1|2a|A|696
9Q6V|1|2a|U|697
9Q6V|1|2a|G|698

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2g

30S ribosomal protein S7

Chain 2k

30S ribosomal protein S11

Chain 2y

Ribosome-associated inhibitor A