HL_9Q7Q_001

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UAAGGGUAA

Length

9 nucleotides

Bulged bases

9Q7Q|1|2|G|17, 9Q7Q|1|2|G|18, 9Q7Q|1|2|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q7Q_001 not in the Motif Atlas

Homologous match to HL_5HR6_001

Geometric discrepancy: 0.3964

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9Q7Q|1|2|U|14
9Q7Q|1|2|A|15
9Q7Q|1|2|A|16
9Q7Q|1|2|G|17
9Q7Q|1|2|G|18
9Q7Q|1|2|G|19
9Q7Q|1|2|U|20
9Q7Q|1|2|A|21
9Q7Q|1|2|A|22

Current chains

Chain 2

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

Ribosomal protein L11

Chain o

Large ribosomal subunit protein eL42