HL_9Q7Q_057

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9Q7Q|1|5|G|4475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q7Q_057 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.2009

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9Q7Q|1|5|A|4474
9Q7Q|1|5|G|4475
9Q7Q|1|5|C|4476
9Q7Q|1|5|A|4477
9Q7Q|1|5|G|4478
9Q7Q|1|5|A|4479
9Q7Q|1|5|A|4480
9Q7Q|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein