HL_9Q87_080
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9Q87|1|a|A|1782, 9Q87|1|a|U|1783, 9Q87|1|a|U|1784, 9Q87|1|a|A|1788
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q87_080 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0509
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
9Q87|1|a|U|1779
9Q87|1|a|U|1780
9Q87|1|a|U|1781
9Q87|1|a|A|1782
9Q87|1|a|U|1783
9Q87|1|a|U|1784
9Q87|1|a|A|1785
9Q87|1|a|A|1786
9Q87|1|a|A|1787
9Q87|1|a|A|1788
9Q87|1|a|A|1789
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: