HL_9Q87_084

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9Q87|1|a|U|1959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_084 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0501

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9Q87|1|a|G|1953
9Q87|1|a|G|1954
9Q87|1|a|U|1955
9Q87|1|a|A|1956
9Q87|1|a|A|1957
9Q87|1|a|G|1958
9Q87|1|a|U|1959
9Q87|1|a|U|1960
9Q87|1|a|C|1961

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

Large ribosomal subunit protein uL14