HL_9Q87_090

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_090 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.0861

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9Q87|1|a|G|2308
9Q87|1|a|U|2309
9Q87|1|a|C|2310
9Q87|1|a|G|2311
9Q87|1|a|G|2312
9Q87|1|a|A|2313
9Q87|1|a|C|2314
9Q87|1|a|A|2315
9Q87|1|a|U|2316

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5