HL_9Q87_094

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9Q87|1|a|A|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_094 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0586

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9Q87|1|a|U|2408
9Q87|1|a|G|2409
9Q87|1|a|A|2410
9Q87|1|a|A|2411
9Q87|1|a|U|2412
9Q87|1|a|G|2413
9Q87|1|a|G|2414
9Q87|1|a|A|2415
9Q87|1|a|A|2416
9Q87|1|a|G|2417

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15