HL_9Q87_096
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- UGAAGUAG
- Length
- 8 nucleotides
- Bulged bases
- 9Q87|1|a|G|2533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q87_096 not in the Motif Atlas
- Homologous match to HL_5J7L_194
- Geometric discrepancy: 0.0651
- The information below is about HL_5J7L_194
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
9Q87|1|a|U|2532
9Q87|1|a|G|2533
9Q87|1|a|A|2534
9Q87|1|a|A|2535
9Q87|1|a|G|2536
9Q87|1|a|U|2537
9Q87|1|a|A|2538
9Q87|1|a|G|2539
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: