HL_9Q87_101
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9Q87|1|a|G|2755, 9Q87|1|a|C|2759
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q87_101 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.0605
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
9Q87|1|a|C|2749
9Q87|1|a|U|2750
9Q87|1|a|G|2751
9Q87|1|a|A|2752
9Q87|1|a|A|2753
9Q87|1|a|A|2754
9Q87|1|a|G|2755
9Q87|1|a|C|2756
9Q87|1|a|A|2757
9Q87|1|a|U|2758
9Q87|1|a|C|2759
9Q87|1|a|U|2760
9Q87|1|a|A|2761
9Q87|1|a|A|2762
9Q87|1|a|G|2763
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: